FEWarp 3D on Segmented Object in Imagestack

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  • shochmut
    Junior Member
    • Aug 2019
    • 3

    FEWarp 3D on Segmented Object in Imagestack

    Hi all,

    I am currently using FEWarp on a set of 3D imagestacks. In addition to the original images I have imagestacks of the images with an object of interest segmented/isolated from the rest of the image. If I run FEWarp on the segmented object imagestack would this data be correct? Or do I need to be running FEWarp on the whole unaltered imagestacks to get correct data?

    Also, when running the FEWarp algorithm with the x,y, and z dimensions set to the actual size my z elements are much thicker than the x and y dimensions. When I then run FEWarp the program often crashes or gets errors causing the program to stop. How can I troubleshoot this? How can I set up my mesh so that this crashing does not occur?

    Thank you so much,

    Skyler Hochmuth
    Colorado State University
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